The Potato Genome
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The Potato Genome
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Author : Swarup Kumar Chakrabarti
language : en
Publisher: Springer
Release Date : 2017-12-26
The Potato Genome written by Swarup Kumar Chakrabarti and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2017-12-26 with Science categories.
This book describes the historical importance of potato (Solanum tuberosum L.),potato genetic resources and stocks (including S. tuberosum group Phureja DM1-3 516 R44, a unique doubled monoploid homozygous line) used for potato genome sequencing. It also discusses strategies and tools for high-throughput sequencing, sequence assembly, annotation, analysis, repetitive sequences and genotyping-by-sequencing approaches. Potato (Solanum tuberosum L.; 2n = 4x = 48) is the fourth most important food crop of the world after rice, wheat and maize and holds great potential to ensure both food and nutritional security. It is an autotetraploid crop with complex genetics, acute inbreeding depression and a highly heterozygous nature. Further, the book examines the recent discovery of whole genome sequencing of a few wild potato species genomes, genomics in management and genetic enhancement of Solanum species, new strategies towards durable potato late blight resistance, structural analysis of resistance genes, genomics resources for abiotic stress management, as well as somatic cell genetics and modern approaches in true-potato-seed technology. The complete genome sequence provides a better understanding of potato biology, underpinning evolutionary process, genetics, breeding and molecular efforts to improve various important traits involved in potato growth and development.
Discovery And Genotyping Of Existing And Induced Dna Sequence Variation In Potato
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Author : Jan Uitdewilligen
language : en
Publisher:
Release Date : 2012
Discovery And Genotyping Of Existing And Induced Dna Sequence Variation In Potato written by Jan Uitdewilligen and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012 with categories.
Genetics Genomics And Breeding Of Potato
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Author : James M. Bradeen
language : en
Publisher: CRC Press
Release Date : 2016-04-19
Genetics Genomics And Breeding Of Potato written by James M. Bradeen and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-04-19 with Science categories.
In this volume, world leaders in potato research review historical and contemporary discoveries resulting in a range of advances. Topics include nutritional quality, yield, disease and insect resistance, processing, plant growth and development, and other aspects. The book also examines research yielding significant molecular resources that facilit
Genome Assembly And Discovery Of Structural Variation In Cultivated Potato Taxa
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Author : Maria Kyriakidou
language : en
Publisher:
Release Date : 2020
Genome Assembly And Discovery Of Structural Variation In Cultivated Potato Taxa written by Maria Kyriakidou and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020 with categories.
"The common potato (Solanum tuberosum L.) is an important staple crop, with a highly complex, heterozygous, tetraploid genome. It can grow in a wide range of altitudes from sea level up to 4,700 meters above the sea level, contributing to its success as a crop. It has its origins in South America, where potato has a large secondary gene pool consisting of wild relatives of diverse ploidy levels. Genetic resources such as landraces and wild relatives are increasingly crucial for developing climate change resilient cultivars with biotic and abiotic stress tolerance.Significant efforts have previously been made to sequence and construct a double monoploid (S. tuberosum Group Phureja – DM1-3) reference genome as well as two wild reference genomes (S. commersonii and S. chacoense clone M6). However, it is uncertain how well the potato genome diversity is actually captured in these three potato genomes, as the genetic riches of the South America taxa are not represented.This doctoral dissertation focuses on the genomic analyses of sequenced data from twelve native South American potato genomes (ten taxa) of various ploidy (2n – 5x): S. tuberosum subsp. goniocalyx (2n), S. stenotomum subsp. stenotomum (2n), S. phureja (2n), S. xajanhuiri (2n), S. bukasovii (2n), S. chaucha (3x), S. juzepczukii (3x), S. tuberosum subsp. andigena (4x), S. tuberosum subsp. tuberosum (4x) and S. curtilobum (5x). Their comparisons with two reference genomes (DM1-3, M6) unraveled a great number of copy number variation (CNV) impacted genes, including disease resistance and abiotic stress genes. Additionally, these genomes have been assembled de novo. The draft genomes of the diploid S. stenotomum subsp. goniocalyx and of the tetraploid S. tuberoum subsp. andigena have been assembled using Third Generation Sequencing data, while the rest of the genomes were assembled using Next Generation Sequencing data. The diploid potato genomes have been used for the construction of a diploid potato pan-genome sequence of nine genomes, including three publicly available reference genomes. Within the pan-genome, there are self-incompatibility and disease resistant genes that are absent from the DM1-3 genome. This work reflects only a part of the tremendous variability of the South American potato taxa"--
Potato Improvement In The Post Genomics Era
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Author : Jagesh Tiwari
language : en
Publisher: CRC Press
Release Date : 2022-12-23
Potato Improvement In The Post Genomics Era written by Jagesh Tiwari and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-12-23 with Science categories.
The book delves into post-genomics advances in potato improvement since the potato genome sequencing in 2011. It includes recent developments in the field of potato genetic resources, genes and SNP markers discovery, and the progress in next-generation breeding applying various omics technologies and modern sequencing tools. It covers cutting-edge technologies in potato - a global perspective, genome sequencing and resequencing of various cultivated and wild species, potato germplasm management and characterization, prebreeding genomics, genome mapping and gene cloning, markers discovery, marker-assisted selection, transgenics, microRNAs, transcriptomics, proteomics, metabolomics, phenomics, next-generation potato breeding technologies including genome editing and genomic selection and bioinformatics applications in the post-genomics era in potato. As genome editing and genomic selection have become emerging tools in crop improvement including potato, several research works have been demonstrated and applied world over. This book concentrates on genomics-aided characterization of germplasm and markers discovery to accelerate potato breeding. Further, various omics technologies strengthen our understanding on discovery of new genes/proteins/metabolites and key traits based on high-throughput phenotyping involved in various biotic and abiotic stresses in potato crop. The book is a useful source of information related to genomics-led research and development of this crop. It will serve as a valuable resource for potato researchers working in the area of molecular biology and would be beneficial for college students, PhD scholars, scientists, academicians, farmers and policy makers.
Genome Analysis Of The Diploid Wild Potato Solanum Bukasovii
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Author : Ilayda Bozan
language : en
Publisher:
Release Date : 2021
Genome Analysis Of The Diploid Wild Potato Solanum Bukasovii written by Ilayda Bozan and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021 with categories.
"Potato (Solanum tuberosum L.) originated in the South American Andes and is an economically important staple crop that can be successfully grown in various conditions and altitudes. The potato genome is complex, with a large gene pool drawn from numerous wild species of varying ploidy levels ranging from diploids to hexaploids. Potato breeding efforts in North America and Europe have traditionally focused on vegetative propagation of tetraploid potato because of its higher yield. However, due to the high heterozygosity levels and difficulties of tetraploid breeding, new improvement efforts are increasingly looking to diploid species as a means of introgressing traits into crop varieties.Genome sequence data and means of analyzing and visualizing the data, are crucial to achieve this goal. Significant work has previously been done by sequencing and publishing different potato reference genomes, a double monoploid (S. tuberosum Group Phureja - DM), two wild reference genomes (S. commersonii and S. chacoense clone M6), a landrace genome (S. stenotomum subsp. goniocalyx), and two diploid S. tuberosum genomes (Solanum tuberosum group Tuberosum RH89-039-16, Solanum tuberosum, Solyntus).The present study focuses on expanding the genomic resources for potato genome analyses. First, this study presents a newly sequenced and assembled diploid genome of S. bukasovii, which is thought to be one of the wild species that is most closely related to the cultivated potato. This genome sequence is compared with the available potato reference genomes and the results show that Copy Number Variation (CNV) affect genes have important functions such as disease resistance and metabolite biosynthesis. Second, a web portal - the Potato Genome Diversity Portal (PGDP) - was developed and implemented to visualize the published potato genomes using JBrowse and to provide a tool to investigate the genome alignments along with aiding the structural variation analysis PGDP also enables researchers to conduct research and share data"--
Molecular Cytogenetic Analyses Of The Potato Genome
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Author : Ahmet Latif Tek
language : en
Publisher:
Release Date : 2003
Molecular Cytogenetic Analyses Of The Potato Genome written by Ahmet Latif Tek and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003 with categories.
Open Chromatin Of The Potato Genome And Its Dynamics In Response To Cold Stress
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Author : Zixian Zeng
language : en
Publisher:
Release Date : 2016
Open Chromatin Of The Potato Genome And Its Dynamics In Response To Cold Stress written by Zixian Zeng and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016 with categories.
Genome Mapping In Plants
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Author : Andrew H. Paterson
language : en
Publisher:
Release Date : 1996
Genome Mapping In Plants written by Andrew H. Paterson and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1996 with Nature categories.
Exploration Of The Genetic Diversity Of Cultivated Potato And Its Wild Progenitors Solanum Sect Petota With Insights Into Potato Domestication And Genome Evolution
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Author : Michael Alan Hardigan
language : en
Publisher:
Release Date : 2016
Exploration Of The Genetic Diversity Of Cultivated Potato And Its Wild Progenitors Solanum Sect Petota With Insights Into Potato Domestication And Genome Evolution written by Michael Alan Hardigan and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016 with Electronic dissertations categories.